CDI System Guides Overview

• ID: CDI-ECO-001
• Type: Ecosystem Overview
• Audience: New readers, collaborators, learners, and technical teams
• Theme: The CDI guide-of-guides

The CDI System Guides are a connected collection of practical guides for building reproducible analytical workflows.

Each guide can stand alone.

Together, they form an ecosystem.

The ecosystem connects:

Question
→ Discovery
→ Acquisition
→ Analysis
→ Interpretation
→ Reporting
→ Decision Support

Current CDI System Guides

Guide	Role in the ecosystem
Data Science Foundations Premium	Parent analytical foundation
Systematic Dataset Discovery	Finding and screening suitable public datasets
CDI Data Acquisition System	Reproducible data retrieval and validation
Microbiome Analysis System	Domain-specific microbiome analysis workflow
Proteomics Analysis System	Results-first proteomics interpretation workflow
Clinical & Medical Data Systems	Clinical and medical data workflow structure

Ecosystem principle

A CDI guide should not only explain a method.

It should show how the method becomes part of a reusable, auditable, and communicable analytical system.